DreEX0067391 @ danRer10
Exon Skipping
Gene
ENSDARG00000091723 | si:ch211-202f3.4
Description
si:ch211-202f3.4 [Source:ZFIN;Acc:ZDB-GENE-131120-116]
Coordinates
chr17:45627857-45630981:+
Coord C1 exon
chr17:45627857-45628031
Coord A exon
chr17:45630432-45630506
Coord C2 exon
chr17:45630896-45630981
Length
75 bp
Sequences
Splice sites
3' ss Seq
TTTGTTGTTGTTGTCTTCAGGGT
3' ss Score
10.59
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GGTGTGTGGGTCCTATGCTGACTTGAACGCTGGCTTCATTTCTGAGGCCCTAATGGACTTCACTGGTGGGACGCATATGTATTACACACTGAGTTCAGCTCCTGCTGACTTGTGGAAAATCATGGAATGTGCATTTATATCAAAGACGCTTATTGGTTGCGGTTCCAATTCAGAG
Seq A exon
GGTTCACCTGAAGAAAATGAGTTACTGCATGGCATAATTGCAGACCATGCTTACACTGTGACCGGGGTATTTGAG
Seq C2 exon
GTAATAAGTGAGGAAAACCCAGTTCAGCTGGTGAGACTGTTAAATCCATGGGGTGAAGAAGAGTGGCAAGGAGACTGGAGTGATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000091723-'5-8,'5-7,7-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(19.3=100)
A:
PF0064816=Peptidase_C2=FE(17.3=100)
C2:
PF0064816=Peptidase_C2=FE(20.1=100)
Main Skipping Isoform:
ENSDART00000153822fB5639
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTGGTGGGACGCATATGT
R:
GCCACTCTTCTTCACCCCATG
Band lengths:
183-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]