DreEX0067433 @ danRer10
Exon Skipping
Gene
ENSDARG00000099986 | si:ch211-207i20.2
Description
si:ch211-207i20.2 [Source:ZFIN;Acc:ZDB-GENE-141212-299]
Coordinates
chr12:9452830-9460217:-
Coord C1 exon
chr12:9459839-9460217
Coord A exon
chr12:9457982-9458150
Coord C2 exon
chr12:9452830-9452929
Length
169 bp
Sequences
Splice sites
3' ss Seq
AGTTATATTTGTTCTTTCAGAAG
3' ss Score
7.64
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
ACTTTTATTATGTATTCTAGAACCCGGATTGTAAATGTCAGCCGCTGTTTTACTTCCGTTTATTACAACCTAAAGTTGTTTGTCATTCTTTGCTCACTTTTCGACTCCACAATTGAGAATCGAGGGCAATGTTAGCTACTTAACTAAACTCGCGACTTCCAGTAGTGTGATATTTGGTTTTGACAGGATGTCTCGCTGCGTCGCGTTACAGACGCATCTGGCGTCCGTGATTGAGGCTCTAGTTCACGCCGCGATCGCTGAAATGTGCAAACTTACGGATGTGGAGGCTCTGTCGGGTCTCACAAGCGATGCTTCAAAAGATCAGCGTAAATACACAGAGACCGAGGCGAGAATGAAGACGGAAAAGGAGGAGAAAATG
Seq A exon
AAGCGGTTTGCATCTGTTATGGAAGTATTGGGCAATGAAGCTCTAGGGAAAATAATAAAGCTCGTGGATGAATCCAAATTACTGTTGAATCTGGAGTGCAAAACGTTTTCAGGCAAAAGGGCAAAGCGGCCAGGCTGCATCTTGAACATTCTGTCTGCTGGTGGACTGG
Seq C2 exon
TCTGTTGCGGTCACAGAGGACCGTCCAGAATCACCAGTGGTTTTGGCAGTGACGATCAGAGATGAATTTGGAAAAGTTGATTTGAAGTCCATCACTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099986_MULTIEX1-1/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.297 A=0.000 C2=0.235
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCGACTTCCAGTAGTGTGA
R:
GTCCTCTGTGACCGCAACAG
Band lengths:
251-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]