DreEX0067497 @ danRer10
Exon Skipping
Gene
ENSDARG00000093780 | si:ch211-212c13.6
Description
si:ch211-212c13.6 [Source:ZFIN;Acc:ZDB-GENE-131119-8]
Coordinates
chr15:21023703-21024704:-
Coord C1 exon
chr15:21024492-21024704
Coord A exon
chr15:21024292-21024413
Coord C2 exon
chr15:21023703-21023799
Length
122 bp
Sequences
Splice sites
3' ss Seq
GTTCTGTGACTCTCTCCTAGATG
3' ss Score
7.81
5' ss Seq
AGTGTAAGG
5' ss Score
5.2
Exon sequences
Seq C1 exon
GACACAGTGGTGGCTCTTCAGGCTCTGTCTTTGTACGCCACCAAAGTGTTCAGCTCTGACGGCTCCAGCACAGTGACTGTACAGTCAGCAGGAGACTCTCACCACTTTGATGTCAATCAGGACAACAAGTTACTGTACCAGGAGAAGCAGCTGGCCAATGTGCCGGGCAAATACAGCATTGAAGTCAAGGGCTCAGCCTGTGTGTCTGTGCAG
Seq A exon
ATGTCTCTTTTCTACAATATCCCTACTCCAAAGAAATCTAATAAATTAGAATTCTCTGTTAAGACTGAGGGAACTTGCCAGAACACAGATTGGCAAATTCTGGACGTCATATTAAACATAGT
Seq C2 exon
ATATAAGGGAATACAATATATAGAGACCTCCAACATGATCATTGTAGATATGAAACTCTTGTCTGGTTTCAGCGCAGAACCGATTTTTATGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093780_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACCAAAGTGTTCAGCTCT
R:
TGCGCTGAAACCAGACAAGAG
Band lengths:
253-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]