DreEX0067827 @ danRer10
Exon Skipping
Gene
ENSDARG00000077905 | si:ch211-236p22.1
Description
si:ch211-236p22.1 [Source:ZFIN;Acc:ZDB-GENE-050419-118]
Coordinates
chr16:47690687-47719250:-
Coord C1 exon
chr16:47719077-47719250
Coord A exon
chr16:47691066-47691182
Coord C2 exon
chr16:47690687-47690869
Length
117 bp
Sequences
Splice sites
3' ss Seq
TCACTTTATTGGGGCATTAGGAC
3' ss Score
2.38
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
AGGTGGACTGTGGTCACCCTGGTTCTCCTCCTCATGCGGTTGTAACAGGAGACAAATTCACCTTCGGTTCAACAGTTCACTACAGGTGTTTAGAAGACAGAGTTTTGATTGGTGAATCCACCCGAGCCTGCCAACTGAACGGCCAGTGGGGTGGCTCGCAACCTCATTGCTCAG
Seq A exon
GACTCACAGGTTGAGCGCCCACTGCTGGCCTCACTTACACCACTTCCAACAGCAACCTAGTTTTCCCATGTGGTCTCCAATCCAGTTACTAGCCAGATTCAGGCCTACTTAGCTTCA
Seq C2 exon
GTGATAAACGGGGAGCGTGTGGAGATCCAGGGACTCCGGCTCATGCCACCCGAGAGGAGAGCAGTTTCCAGCAGCACGCCAAAGTTCGCTTCACCTGCTCCACGGGTCACACTCTCTACGGCTCGGCTGAGCGGATCTGCTTCCCCAACGGCACCTGGTCCGGCCGACAGCCCACCTGCAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077905-'60-58,'60-57,61-58
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=0.000 C2=0.226
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=91.5)
A:
NO
C2:
PF0008415=Sushi=WD(100=87.1)
Main Inclusion Isoform:
ENSDART00000143582fB5673
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTCCTCCTCATGCGGTTG
R:
GGAGCAGGTGAAGCGAACTTT
Band lengths:
254-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]