DreEX0068148 @ danRer10
Exon Skipping
Gene
ENSDARG00000057681 | si:ch211-266o15.1
Description
si:ch211-266o15.1 [Source:ZFIN;Acc:ZDB-GENE-131127-116]
Coordinates
chr17:14762830-14763642:-
Coord C1 exon
chr17:14763541-14763642
Coord A exon
chr17:14763090-14763148
Coord C2 exon
chr17:14762830-14762994
Length
59 bp
Sequences
Splice sites
3' ss Seq
CTTTTGTTGTCCTTTGTCAGATC
3' ss Score
9.12
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
CTACAGAAGAGAATAGCTCCTCTGCCAATGAAGAAATGGATGTGGAGACTGAGAGGGAGAAGGTTTCAGAGGACACCCGGGTCACCCCTTCATCTGTTATAG
Seq A exon
ATCTTCAAGAAGAAATACAGTCTGAGCTTAGGATCGAGTCATCGCGAAGTGATGCTATT
Seq C2 exon
CCAGAGCCGCATTTAGAAACCACAGACAGAGATACAAGTTACTCACCTGTTATAAGAATTAAGGATGAGCCTATTGATGAAGACTATGATAAAGCGTTAATGCCAGAGTCAGACTTGAGCCGAATTAAACAGGAGCTTGACGGGTCTGATAATAATGAGACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057681_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCACCCCTTCATCTGTTAT
R:
TCGGCTCAAGTCTGACTCTGG
Band lengths:
146-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]