DreEX0068177 @ danRer10
Exon Skipping
Gene
ENSDARG00000074575 | si:ch211-269i23.2
Description
si:ch211-269i23.2 [Source:ZFIN;Acc:ZDB-GENE-090312-99]
Coordinates
chr1:30298332-30301445:-
Coord C1 exon
chr1:30301327-30301445
Coord A exon
chr1:30301182-30301216
Coord C2 exon
chr1:30298332-30300358
Length
35 bp
Sequences
Splice sites
3' ss Seq
TGGACTGAATTTGTTTACAGCAG
3' ss Score
4.55
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
Exon sequences
Seq C1 exon
ACGTTCAGGGAAAGACTTCGGAGAGGAATGACGACGAATAATCTAAAAAGTTTGTGATTTTTTTAGGAGTTTGGCATGGTTTCTCAGTTCGTCCGTAAGTCGCAATGAATGAAGTTCAG
Seq A exon
CAGTCACTGGGGACAGATCGACTGTCAGAAAGGAG
Seq C2 exon
GTAAGATCGGTTGGCACTGTGTCACTCACTCACCATTGTCTGTGTCTACAGCCTCAGCCAGTGTGAATGAGGGCATACCATGCACCTGGATACACGCTGCTTTTTTAGCCCCAGTTTTATGTATTTTACCTTTTAAATCTTCCATCATTTTTAAATATTTGATCATGATTAAAAGTGAAAACAAAAGTGACCGTGCACTGAGAAGTGCATCTCCTCACAGAAACGCATATAAATCAGACTTTCATTCCATTAAATGCACATTTGATGGAAGTGCATCCTTCAGCGCAACTTCTCCCTTCTCCAATGGAGACGGTGAGACTCGAGGCAGACCGTCGGGTAACAAAGTGAGCAAAATAAAAAATATTTTCTTGCAAATGGATGGAAAACAAAATCAAGACAGTCCCAACATCAGCAAACCCACATCACCCAGATTTCCATTGGATTCCACCCCTTACAGGTCTAGCCAGAGCAGTGTTTCTAGTCTAGATTCAGCCACTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074575_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.895
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGAGAGGAATGACGACGAA
R:
GACACAGTGCCAACCGATCTT
Band lengths:
125-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]