DreEX0068179 @ danRer10
Exon Skipping
Gene
ENSDARG00000074575 | si:ch211-269i23.2
Description
si:ch211-269i23.2 [Source:ZFIN;Acc:ZDB-GENE-090312-99]
Coordinates
chr1:30271051-30279406:-
Coord C1 exon
chr1:30279202-30279406
Coord A exon
chr1:30275790-30275906
Coord C2 exon
chr1:30271051-30271239
Length
117 bp
Sequences
Splice sites
3' ss Seq
GTCCCTTGTCCTACTTGCAGAGC
3' ss Score
9.76
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GGGATCAGGAGAATTACTGGATGAGTCGAGCTGCAATGTTTCCCCCTCTGGCTCCGTCTCTTCCATCCCTTCCTGTATGCCGTTCTCCTGGTTTGGGGACAGAGACAAGGAAAAAGATAGAGAGAGAGAAAAAGAGCGTTCCGCATCCAGTGGCAGTCTGCCTCGCTCGCCTTCAGAAGGATACATAGAGGATCATACAAACAAG
Seq A exon
AGCTTATCTGTGACGGGTGATTCAGTCGCAGGTAGTCCTCGTTCTCTGTTGGCAGGGTTTCTGAGAGAGCCCCATGTCCTTGGGCGCTCACACACACACACCTTCTCCTCGTGTGAG
Seq C2 exon
ACTCTTGATGATGTCTCCACTCCAGCAGCAAAGCAATACATGTGGCAGAACCGCCCTCTTTCAGAGTGGACCAATCAGCAAGTTTGCCACTGGTTGATGGGCATGAACATGGAACAGTATATAGCCGAGTTTACAGCTAAAGGCGTGGATGGCCAGCATCTCTTGAGCATGGACAGCAGTAAACTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074575_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.743 A=0.375 C2=0.352
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0764712=SAM_2=PU(66.2=67.2),PF095975=IGR=PU(60.8=48.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTCTCTTCCATCCCTTCCT
R:
CCCATCAACCAGTGGCAAACT
Band lengths:
253-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]