DreEX0068192 @ danRer10
Exon Skipping
Gene
ENSDARG00000077596 | si:ch211-269m17.1
Description
si:ch211-269m17.1 [Source:ZFIN;Acc:ZDB-GENE-091204-154]
Coordinates
chr10:17955868-17958665:+
Coord C1 exon
chr10:17955868-17956034
Coord A exon
chr10:17957616-17957651
Coord C2 exon
chr10:17958576-17958665
Length
36 bp
Sequences
Splice sites
3' ss Seq
AATGTCCATTTGCCCTGCAGACT
3' ss Score
9.35
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
AATTCACTGGTGCGAATCCTCACAGCGAAGGAGAGGGACCGGGCTCGGGCTCTATTCCAGAGTATAGATCAGGACAAAGATGCCATCATTACTGCCGGAGAAGCCAGAAAAGCCCAAACCTCATGGTTTCAAAAGACTAACAAAGAATCACAGTCCTGCAATGTCAG
Seq A exon
ACTCATGGGATTGTGTTCCCCTTTGTTCAGTATGGG
Seq C2 exon
TATCAGCCATGTTGGGCCAATATCTGAAAGCAGTCCTGCCAGCTCCAGCAGCGAGAGAAGCAGGGATAAAGCCATGGAGAGTGACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077596_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=0.000 C2=0.710
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAGAAAAGCCCAAACCTC
R:
CTTCTCTCGCTGCTGGAGCT
Band lengths:
126-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]