DreEX0068560 @ danRer10
Exon Skipping
Gene
ENSDARG00000016464 | si:ch211-89p3.3
Description
si:ch211-89p3.3 [Source:ZFIN;Acc:ZDB-GENE-041014-372]
Coordinates
chr20:35254630-35256696:+
Coord C1 exon
chr20:35254630-35254830
Coord A exon
chr20:35255530-35255550
Coord C2 exon
chr20:35256448-35256696
Length
21 bp
Sequences
Splice sites
3' ss Seq
CTATTTTATTCTGGAATTAGTCG
3' ss Score
2.61
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
GTCCAGTCCTCTGTAGCAGTTGGGACCCCGGACTACATCTCACCAGAGATCCTGCAGGCTATGGAGGACGGGAAGGGAAAGTACGGGCCCGAGTGTGACTGGTGGTCTCTGGGGGTCTGCATGTATGAGATGCTGTATGGAGAGACGCCTTTTTATGCTGAATCTCTGGTGGAGACGTATGGAAAGATCATGAACCATAAG
Seq A exon
TCGTCTCAACCTAACGATGAG
Seq C2 exon
GAGCGCTTCCAGTTCCCACTTCAGGTGACTGATGTGTCCGAGGATGCTAAAGATCTTGTTCGGCGGCTGATCTGCAGCAGAGAACACCGGCTGGGCCAGAACGGTATCGAAGACTTTAAGCAGCACCCCTTTTTCACAGGCATCGACTGGGACAACATCCGCACATGCGAAGCCCCCTACATCCCTGAAGTCAGCAGTCCCACTGACACCTCCAACTTTGATGTGGATGACGACTGCCTCAAAAACTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016464-'7-9,'7-8,8-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=0.429 C2=0.060
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(24.7=100)
A:
PF0006920=Pkinase=FE(2.2=100)
C2:
PF0006920=Pkinase=PD(16.5=53.0),PF0043319=Pkinase_C=PU(42.6=24.1)
Main Inclusion Isoform:
ENSDART00000113773fB5722
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTATGGAGAGACGCCTT
R:
GCATCCTCGGACACATCAGTC
Band lengths:
118-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]