DreEX0068563 @ danRer10
Exon Skipping
Gene
ENSDARG00000016464 | si:ch211-89p3.3
Description
si:ch211-89p3.3 [Source:ZFIN;Acc:ZDB-GENE-041014-372]
Coordinates
chr20:35295779-35303401:+
Coord C1 exon
chr20:35295779-35295936
Coord A exon
chr20:35298537-35298611
Coord C2 exon
chr20:35301599-35303401
Length
75 bp
Sequences
Splice sites
3' ss Seq
GTCTGCCCTTTCCTTCTCAGTGG
3' ss Score
10.16
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GGTCGTCCTCTCAGAACGGCAGTGCTCTAAGGAGGGAGCTGTCCAGCGGCAGCTACAGCTCTAAACGGCAGACCATGACTTCACCCTCCGAGAGTTCGCTGTCATCAGGAGGAGGGATGGACGTGGGGGAAGCGCCGCTCTCTCAGTTTGACAGAGAG
Seq A exon
TGGCAGGCAGTATCGCCCTCGGAGAAGACCCCTGATCTGAAAAGGGCTTTAAGGACCCTGCTTAGTAAGATGAAG
Seq C2 exon
GACTCTGATTCGCCGCGGCACTCCACTGCCTCCAACAGCTCCACCTTCAGCAGCCCGCCGAGCCCCGCCTCCCCACACAAGACAAAGTCCCTCTCATTGGAGAGCACAGACCGCACCGCCTGGGACACATGATGGACTCAACTGTGAGCCAATCACAACAAACTCAAGTCTGCCTGTCACAGTGCTCCGCCCCCCTCCCATACAGCTGCACTGCAGGCCCCTCCAACTTAATTTGCATAAAGGCTCACCACTGGAGAACATCCCAAGGAGAAACCATCCCAACGTTGAATGCGTTCGCTAAAGTTTTACCACTTCAGATTTGGAAGAAAAGCCAGCAGATTTTATCGTGACTGGTGTTTGTATATAGACTTGGTTAAGGGTGAACTTTTATTTATTTATCATTCAGCCATTTCAAGGTGGAAAATACAGTCACGTCCCTCACTCTGCTCTGGACCGTACTGGATTGGCGATTCCATTATAGGATCCCACTAATTAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016464_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000040456fB5723
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTCATCAGGAGGAGGGAT
R:
CGGTCTGTGCTCTCCAATGAG
Band lengths:
174-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]