DreEX0069021 @ danRer10
Exon Skipping
Gene
ENSDARG00000097891 | si:ch73-4e5.1
Description
si:ch73-4e5.1 [Source:ZFIN;Acc:ZDB-GENE-131121-237]
Coordinates
chr3:23571367-23635349:-
Coord C1 exon
chr3:23635251-23635349
Coord A exon
chr3:23582218-23582272
Coord C2 exon
chr3:23571367-23571683
Length
55 bp
Sequences
Splice sites
3' ss Seq
TTTATTTGTTTTGCTTGCAGGCC
3' ss Score
9.84
5' ss Seq
ACGGTAGCC
5' ss Score
4.01
Exon sequences
Seq C1 exon
CTCCTCAAGCCAGGCCTCTTAATCTCAGTTCTGGAAGCTGGCTTATTTCCTTGACCCACCACCCTTCCTCTTTGTCGTCACTTGAGTAGCTGATGTGCG
Seq A exon
GCCGGAGCCCTCCCCACTCATATCATCAAAAAGGAAGCTGGTGAAAAATGAAACG
Seq C2 exon
ACGCCAACAACAGTGGATTACAGTGGACTAACAGATTTTATGATTTCCTGAATAAATCTGTAAAAGTCTCTTATTTGGTCATGAGGAGAAAAAGTGACCAATTTCAGGTCCATTTGGACATGGAGTGACACGTAAATTCTGTATAGACATTCTGTACGTTCCCCCGAGCGTGGAGTGTATGTGAGTATGTCAAATGTGCATTAATACATGTGTGTGTGTTATTTTTTTGAAGTCTGTTCTGTTAAAGCGTTGCATATGTAGACCAATAAAACTTTTGTGTAGGGTTTAATTTTTGTTGATTTTACAATTTTAATGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000097891_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCACCCTTCCTCTTTGTCG
R:
GGTCACTTTTTCTCCTCATGACCA
Band lengths:
142-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]