DreEX0069023 @ danRer10
Exon Skipping
Gene
ENSDARG00000097891 | si:ch73-4e5.1
Description
si:ch73-4e5.1 [Source:ZFIN;Acc:ZDB-GENE-131121-237]
Coordinates
chr3:23635215-23874332:-
Coord C1 exon
chr3:23874188-23874332
Coord A exon
chr3:23726792-23726878
Coord C2 exon
chr3:23635215-23635349
Length
87 bp
Sequences
Splice sites
3' ss Seq
ATCCCTTTTAATCTCTGAAGGGC
3' ss Score
6.48
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
ATATGGTGTTGATCCAGCACTCCGTTGACTGAAATGATGATGAGACAGACTCTGGCACAATCTCTGGACGTCGTCTCGGCTGAAGCTCCGCCATGCCTCCTCAGCCTGACTCTACACAATCAATACACAGGAGCTGGAGAAACAG
Seq A exon
GGCAGCGTGCCAGAGGCTGGAGATGGTAGCAGGAATGCTAATGGAGCCATAACCACCACTAATACCTTTAACAGCATCCTGGCAGAG
Seq C2 exon
CTCCTCAAGCCAGGCCTCTTAATCTCAGTTCTGGAAGCTGGCTTATTTCCTTGACCCACCACCCTTCCTCTTTGTCGTCACTTGAGTAGCTGATGTGCGGTAAGCCCACTGATACACACTGGCTGATCAACAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000097891_MULTIEX1-3/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCAGCACTCCGTTGACTG
R:
AGCCAGCTTCCAGAACTGAGA
Band lengths:
178-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]