DreEX0069081 @ danRer10
Exon Skipping
Gene
ENSDARG00000068846 | si:ch73-95l15.3
Description
si:ch73-95l15.3 [Source:ZFIN;Acc:ZDB-GENE-131125-23]
Coordinates
chr15:35077975-35078766:+
Coord C1 exon
chr15:35077975-35078058
Coord A exon
chr15:35078268-35078352
Coord C2 exon
chr15:35078712-35078766
Length
85 bp
Sequences
Splice sites
3' ss Seq
TGTTTTGGGTTCTCTTTCAGCAT
3' ss Score
9.24
5' ss Seq
AAGGTCTCT
5' ss Score
0.9
Exon sequences
Seq C1 exon
ATCCTCATCAAATTGAAAAATACTTGAAGTACAGCGTCTTTCTAGCCCCGCTGAATGGAGAAGTAAAAAATGCCAAGTCAAAAG
Seq A exon
CATGGCGCAAAAATTTTCTGCGCATAAAGACCATGGTGTTGCTCGGCGGACCAGATAATGAAGTCATTAAACCATGGCAATCAAG
Seq C2 exon
TATGTTTGGGTTTTATGACAGCGATGAAAATGTGATCGATATGGAGCATCAGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068846-'7-10,'7-8,8-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0208910=Palm_thioest=FE(10.9=100)
A:
PF0208910=Palm_thioest=FE(10.9=100)
C2:
PF0208910=Palm_thioest=FE(7.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGAAAAATACTTGAAGTACAGCGT
R:
TCCTGATGCTCCATATCGATCAC
Band lengths:
127-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]