DreEX0070047 @ danRer10
Exon Skipping
Gene
ENSDARG00000077245 | si:dkey-225n22.4
Description
si:dkey-225n22.4 [Source:ZFIN;Acc:ZDB-GENE-120709-30]
Coordinates
chr24:513912-514904:+
Coord C1 exon
chr24:513912-513965
Coord A exon
chr24:514702-514755
Coord C2 exon
chr24:514833-514904
Length
54 bp
Sequences
Splice sites
3' ss Seq
ATATGTGTGTGTGTGTCCAGGGC
3' ss Score
8.38
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
GGGGCGCAGGGGCCTTCAGGGACCCCTGGAGCAGACGGAGCTCGCGGCCCCAAG
Seq A exon
GGCAGTGCAGGAGAGACGGGGGGCGCAGGTGCTCCTGGAGCTGCGGGTCAGAAG
Seq C2 exon
GGCCAGCAGGGAGAGTCGGGATTCCCAGGAGCTCAGGGAGCCACAGGCCTTCCTGGATTTAAAGGACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077245_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(21.5=77.8),PF0139113=Collagen=FE(24.6=100)
A:
PF0139113=Collagen=FE(24.6=100)
C2:
PF0139113=Collagen=FE(33.3=100),PF0139113=Collagen=PU(21.5=70.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGGGCCTTCAGGGAC
R:
TGTCCTTTAAATCCAGGAAGGCC
Band lengths:
117-171
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]