DreEX0070439 @ danRer10
Exon Skipping
Gene
ENSDARG00000079700 | si:dkey-276l13.6
Description
si:dkey-276l13.6 [Source:ZFIN;Acc:ZDB-GENE-120215-203]
Coordinates
chr6:9913813-9933283:-
Coord C1 exon
chr6:9933187-9933283
Coord A exon
chr6:9926710-9926788
Coord C2 exon
chr6:9913813-9913913
Length
79 bp
Sequences
Splice sites
3' ss Seq
TGTGTATTTTTCGCGAACAGGTT
3' ss Score
8.83
5' ss Seq
TCGGTAATT
5' ss Score
7.06
Exon sequences
Seq C1 exon
ACCCTTCCACAGCTCGTTCGCGTTACACCGACCGCGCGCCCTGTGCTCTGCAGAAAACTCCCCGGATTTCACTAAAGCACGCAATATCACCGAAAAG
Seq A exon
GTTGCTGCTGCGACAGGCTCAGCATCGTGATGGCTATCGGCGATGGAATCATCTATCGATCCAACCCTAGTACCAATCG
Seq C2 exon
CGGACTCCAGCTCGTGACGATCCTGCACCCGACTACTCACCGTCCTTCACCTACTTCCCGGAGCACCAGAGCACCTCACCCTAAAGAAGAGCACCTTTTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079700-'0-1,'0-0,2-1
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCTCGTTCGCGTTACA
R:
TTTAGGGTGAGGTGCTCTGGT
Band lengths:
175-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]