DreEX0070598 @ danRer10
Exon Skipping
Gene
ENSDARG00000104730 | si:dkey-33b17.3
Description
si:dkey-33b17.3 [Source:ZFIN;Acc:ZDB-GENE-030616-171]
Coordinates
chr8:35211215-35214116:+
Coord C1 exon
chr8:35211215-35211304
Coord A exon
chr8:35211545-35211817
Coord C2 exon
chr8:35213835-35214116
Length
273 bp
Sequences
Splice sites
3' ss Seq
TCCACCTGTTTCCTTTTCAGCTA
3' ss Score
11.42
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
ACTTTGTATTCAGCGTGGCTAAAATGTCACAGAAAAAGCTCTATAGTTCTCTCATATTGATTTTGGCTCTATTCTTTGTAGGGGAAAGTG
Seq A exon
CTAATGTATATTACATGTACCGTGTATCAAGATGCATCTTCAGCTCCTCTAATATCAGTGCCATGGTGTATTTTGACCGCACGTATTTCAATAAAAATCTATTCATACAGTTTAACAGCAATCTGGGGAGGTTTGAAGGGTTTAACGAGTATGGATTAAAACTTGCAGAGTTCTGGAACAATGGAACATTTGTAGATCAGGAGAAAGACGTTGTGGAATTTTTCTGCAAGTATAATTCTCAAATCTATGAAAACAGCATCTTAGATAAAGCAG
Seq C2 exon
TGAAACCAAAGGTTAAGCTTAGTTCAGTGACCCGGGCCGGTGGAAGACAATCAACAGTTTTGATGTGCAGCGCATATGATTTTTATCCTCCACACATCAACGTGTTCTGGTTGAGAAATGGTGAAGTAATGACCTCTGAAGTGACCTCAACTATGGAGATGGCTGATGGTGACTGGTATTACCAGATTCACTCTGAGCTTGAATACAGTCCGAAACCTGGAGAAAGGATTTCCTGTGTGATTGAACATGCCAGCTCTAACAAACCCATGATTTATGACTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104730_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0096914=MHC_II_beta=WD(100=82.4)
C2:
PF0765410=C1-set=WD(100=88.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCGTGGCTAAAATGTCACA
R:
CCTTTCTCCAGGTTTCGGACTG
Band lengths:
308-581
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]