DreEX0070978 @ danRer10
Exon Skipping
Gene
ENSDARG00000086494 | si:dkey-7i4.2
Description
si:dkey-7i4.2 [Source:ZFIN;Acc:ZDB-GENE-131121-32]
Coordinates
chr15:820733-821968:+
Coord C1 exon
chr15:820733-820768
Coord A exon
chr15:820914-820969
Coord C2 exon
chr15:821847-821968
Length
56 bp
Sequences
Splice sites
3' ss Seq
TCTCCTTACATCTTAAATAAGGA
3' ss Score
-0.49
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
ATCTTCTCCAGCTCAAGTCTCTCTGATGAAGAAAAG
Seq A exon
GGATTCACTGACATCTGTTTCACTCCTACTGCTTAAATCAGTGTGTGACTAGAAAA
Seq C2 exon
AGTGTCAAAACCCACAGAACAGCAGATTATGATGAAGATGGCGTTTATTAAAGAGGAGAGTGAAGACCTGAGGATTGAAGAAACATTCACAGTCAAACATGAAGAGACTGAAGAACAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086494-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
80%=100=75%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.000 C2=0.838
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCAGCTCAAGTCTCTCTGA
R:
TCAGTCTCTTCATGTTTGACTGTGA
Band lengths:
143-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]