DreEX0071281 @ danRer10
Exon Skipping
Gene
ENSDARG00000095339 | si:dkeyp-44a8.4
Description
si:dkeyp-44a8.4 [Source:ZFIN;Acc:ZDB-GENE-070705-543]
Coordinates
chr14:6332643-6336046:-
Coord C1 exon
chr14:6335960-6336046
Coord A exon
chr14:6335625-6335693
Coord C2 exon
chr14:6332643-6332681
Length
69 bp
Sequences
Splice sites
3' ss Seq
GTATGTGCTCTGGCTGACAGGGA
3' ss Score
6.59
5' ss Seq
CTGGTACAG
5' ss Score
3.91
Exon sequences
Seq C1 exon
GGGGATCGTGGTCCTGTAGGAAAGAGAGGCCTGAAGGGGAAGAAAGGCGAGCAGGGGCCGCCAGGTCTGGATCAACCCTGTCCTGTG
Seq A exon
GGAGATGAAGGATGTAAGAAAGAGGCAGTAGAAGCGGGGTCTTCAGCTCCTGAGGCCCCCTGCCCGCTG
Seq C2 exon
GGTCCTGATGGTCTTCCAATACCAGGATGCTGGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000095339_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(39.4=100)
A:
PF0139113=Collagen=PD(17.5=60.9)
C2:
PF0139113=Collagen=PD(7.0=38.5)
Main Inclusion Isoform:
ENSDART00000133031fB5933
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGATCGTGGTCCTGTAGG
R:
CAGCATCCTGGTATTGGAAGACC
Band lengths:
119-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]