DreEX0072241 @ danRer10
Exon Skipping
Gene
ENSDARG00000099353 | slc25a13
Description
solute carrier family 25 (aspartate/glutamate carrier), member 13 [Source:ZFIN;Acc:ZDB-GENE-080319-2]
Coordinates
chr19:41786047-41786923:-
Coord C1 exon
chr19:41786873-41786923
Coord A exon
chr19:41786695-41786749
Coord C2 exon
chr19:41786047-41786189
Length
55 bp
Sequences
Splice sites
3' ss Seq
TAATAAATTTCTCATTACAGAAA
3' ss Score
7.17
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
Exon sequences
Seq C1 exon
GTAATGATAAAGAGGGCCGATCCAGCAGAGCTCAAGTTCATTTTCTTAAAG
Seq A exon
AAAGAAAACCTGAGGATTAATTTAAAAATGCACCGAGCACTGTATGGAACTCATA
Seq C2 exon
TATGCCAGTGTGGAGAAGAATGGAGAGCGCTACATGTCCCCAGAGGACTTTGTCTTCAAATTTCTCCATGCGCAAACAGACATTTGGCTTTCCAAGGATTCCGCCGTTCTACTGACAGGTGTTTTGGACCAAACCAAAGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099353_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0003627=EF-hand_1=PU(42.1=16.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAAAGAGGGCCGATCCAGCA
R:
GCCAAATGTCTGTTTGCGCAT
Band lengths:
133-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]