DreEX0072652 @ danRer10
Exon Skipping
Gene
ENSDARG00000037517 | slc35c2
Description
solute carrier family 35 (GDP-fucose transporter), member C2 [Source:ZFIN;Acc:ZDB-GENE-030131-2202]
Coordinates
chr23:20514828-20524930:+
Coord C1 exon
chr23:20514828-20514957
Coord A exon
chr23:20516469-20516682
Coord C2 exon
chr23:20524808-20524930
Length
214 bp
Sequences
Splice sites
3' ss Seq
TCCGTCTCCCATCTTTTTAGTAG
3' ss Score
7.37
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GAGGTGTGCACTCTGCTGCTGGCAGTGGAGTTCTTGGGGGATAAAATGAGCACAGTCAACTGGCTTGGTTTTGCTGTGTGCCTGTCTGGGATATCACTTCATATTGGCCTAAAAACATACCGTAACAAAG
Seq A exon
TAGGAAATGGCCCCATGGTAAGAAACCTACAAGTCAGGGAGAACCCACACCTTGAGCTTCCACTTCTGCAGGCAAAAGATGACTACTGTGAAGACACAAATGACGAAGAGGAGCATGAGATTCTCTATTAGTCTGAGGAAGAAATGAGTGTCCTGAATGGGCTCATGGAATAGTCTTCTTTAAAGACTCATATCAGTGCTCCCATTGAACACAG
Seq C2 exon
GTTTTTTAATTGGTACTAACACATTCACGATGGCCCACATCTCTCCTCTCGTCCTCCCAGAGCGAATGACAATCTTCCTGGTGACTGTTCTCCTGATACTGGTTTCTGAAGTTCAAACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037517_MULTIEX4-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.023 C2=0.000
Domain overlap (PFAM):
C1:
PF0315111=TPT=PD(23.2=79.5)
A:
NO
C2:
PF0004116=fn3=PU(1.3=2.4)
Main Inclusion Isoform:
ENSDART00000132920fB6053
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGTGCACTCTGCTGC
R:
TTGTGTTTGAACTTCAGAAACCAGT
Band lengths:
252-466
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]