DreEX0073077 @ danRer10
Exon Skipping
Gene
ENSDARG00000044808 | slc4a4b
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 4b [Source:ZFIN;Acc:ZDB-GENE-091030-1]
Coordinates
chr21:5948134-5953543:+
Coord C1 exon
chr21:5948134-5948313
Coord A exon
chr21:5950735-5950830
Coord C2 exon
chr21:5953467-5953543
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTGTCTGTGTGTGTGTGAAGCGC
3' ss Score
6.73
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
AAAACATCACTGACAGTCAAATCGAGAGCGGGCAGCTGAAGGCCGATCTGAGAGAGACGGTCATATACACTCTGCTGAGGAAACATCGACACCAGACCAAAAAATCCAACCTGCGCTCACTGGCAGACATCGGCAAGAGTGTGTCGAGCGCCAGTCGCCTGTTCAGCAGCCAGGAGAACG
Seq A exon
CGCGCGGTCCTATCGATCACACAGTGCCTTGCTTTACCACTTTTGAACCTGAAGAACAAATGCAGATGCAGAGAAGCAACAGCATGGGCCTTCTCT
Seq C2 exon
GCAGTCCGACCACAGCTCATCGTAACCTGACCTCCACCAGCCTGAATGACTTGTCAGACAAACCAGAGAAAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044808_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=0.667 C2=0.846
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(23.8=100)
A:
PF075658=Band_3_cyto=FE(11.3=100)
C2:
PF075658=Band_3_cyto=FE(9.9=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCCGATCTGAGAGAGACG
R:
GTTACGATGAGCTGTGGTCGG
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]