DreEX0073445 @ danRer10
Exon Skipping
Gene
ENSDARG00000004246 | slit2
Description
slit homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-010306-3]
Coordinates
chr1:23162427-23163090:+
Coord C1 exon
chr1:23162427-23162590
Coord A exon
chr1:23162763-23162774
Coord C2 exon
chr1:23162958-23163090
Length
12 bp
Sequences
Splice sites
3' ss Seq
TCTTTGCTCATGCTTTCAAGACT
3' ss Score
3.93
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
TCGCCTGCACTCTAATAATCTGCTATGTGATTGCAATGTGGCCTGGCTCTCTGATTGGCTGAGACAGAGGCCCCGCCTTGGCCTCTACACACAGTGTATGGCTCCACCCTCCCTTAGGGGCCACAACATCGCAGAGGTTCAGAAGAAAGAGTTTATGTGTACAG
Seq A exon
ACTTCAGTGAAG
Seq C2 exon
GGCCCCAGTCACACTCATCCTGTAGTGTGCTGCAGTGTCCTGAGCTCTGCACCTGCAGTAATAATGTAGTGGACTGCCGGGGGAAAGGACTTACTGAAATACCCACCAACCTGCCAGAAACTATCACTGAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004246-'11-10,'11-9,12-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(11.5=12.5)
A:
NO
C2:
PF0146213=LRRNT=WD(100=62.2)
Main Inclusion Isoform:
ENSDART00000171951fB6127
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACAGTGTATGGCTCCACC
R:
ACAGGATGAGTGTGACTGGGG
Band lengths:
100-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]