DreEX0073453 @ danRer10
Exon Skipping
Gene
ENSDARG00000004246 | slit2
Description
slit homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-010306-3]
Coordinates
chr1:23212575-23219297:+
Coord C1 exon
chr1:23212575-23212783
Coord A exon
chr1:23214756-23214796
Coord C2 exon
chr1:23217722-23219297
Length
41 bp
Sequences
Splice sites
3' ss Seq
ACATTTCTGTAACCTTCAAGCTG
3' ss Score
4.92
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTGTATCCATGGCTCGTGTATGGCCATAAACTCATACTCGTACAGCTGCCGTTGTCTTCCAGGCTTTGCAGGTGTGCTGTGTGATGAAGAGGAGCAGCTCAGCCCCTGTCAGTATATAGCATGCAAATACGGCCGATGTCGTGTGTCTGGACTGGGCAAAGCCTATTGTGAGTGCAACAGCGGCTACACGGGGCAAAGCTGCGACAGAG
Seq A exon
CTGCTACTGAAAGCGGTATGGACCCCACTCAGGTCCGCCAG
Seq C2 exon
AGATGGCGTGTCGGGGGGAACGGGTCCGAGATCACTATCAGACGCAGCAGGGCTACGCCGCGTGCCAGAGCACAGAGAAGGTCTCGCGTTTAGAGTGTCGGGGCAGCTGTGGGGACGGGACCTCCTGCTGCGCCCCGCTCCGCAGCAAACGCAGGAAATACACCTTCCAATGCACAGACGGGTCCTCTTTTGTACAGGAGGTGGAAAAGGTTGTCAAGTGTGGCTGCACAAAATGTCCATCCTAAAACAACAACAACAAAAATACATCCTCACCCTCCCCTTGTTTGAAGTCCCCTGTTTTGTTTTTGTCAGTGTTGGACTAATGTTTTTTTCCTTCAAAGGAGATAATGGATTACTGTAAGATAAAGAACCTATTTTTTATTATGAAGCTGAGAAAAAAGGACAAAAAATAGATTTTAGAGGTTTTTTATTTGCCATCTTAGGTACTGTGACGTTTTCATTACCTTTTTTTTTTTTTTTGGGCAAAATCACCTCAAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004246_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.429 C2=0.340
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(75.8=35.2)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTGTGAGTGCAACAGCGGC
R:
CGACACTCTAAACGCGAGACC
Band lengths:
146-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]