DreEX0073456 @ danRer10
Exon Skipping
Gene
ENSDARG00000004246 | slit2
Description
slit homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-010306-3]
Coordinates
chr1:23174108-23176943:+
Coord C1 exon
chr1:23174108-23174271
Coord A exon
chr1:23175748-23175768
Coord C2 exon
chr1:23176793-23176943
Length
21 bp
Sequences
Splice sites
3' ss Seq
CTTCCCGCACACACACTCAGGGA
3' ss Score
3.87
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
TCATCTGGCCCAGAACCCCTTCATGTGTGACTGCCATTTGAAGTGGTTAGCAGATTACCTGCAAGACAACCCTATTGAGACCAGTGGAGCTCGGTGCACCAGTCCCCGGCGCCTTGCTAACAAACGTATTGGCCAGATCAAGAGCAAAAAGTTCCGCTGTTCAG
Seq A exon
GGATTCATCATATCAATAAGT
Seq C2 exon
GCGTAGAAGACTACCGCTCAAAACTAGGTGGGGATTGCTTTGCTGATTTGGCCTGTCCAGAGAAATGTCGATGTGAAGGAACCACAGTGGACTGCTCTGGACAAAAGCTCACCAAGATCCCAGACCACATCCCTCAGTATACAGCAGAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004246_MULTIEX2-1/18=C1-2
Average complexity
S
Mappability confidence:
100%=100=95%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=PD(35.4=30.4)
A:
NO
C2:
PF0146213=LRRNT=WD(100=54.9),PF138551=LRR_8=PU(5.0=5.9)
Main Inclusion Isoform:
ENSDART00000171951fB6129
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGCCTTGCTAACAAACGTA
R:
ATCAGCAAAGCAATCCCCACC
Band lengths:
104-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]