DreEX0074090 @ danRer10
Exon Skipping
Gene
ENSDARG00000067673 | snapc4
Description
small nuclear RNA activating complex, polypeptide 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5794]
Coordinates
chr5:50526758-50528410:-
Coord C1 exon
chr5:50528318-50528410
Coord A exon
chr5:50528091-50528223
Coord C2 exon
chr5:50526758-50526828
Length
133 bp
Sequences
Splice sites
3' ss Seq
GCTATTTCTATTTACTATAGAAG
3' ss Score
4.45
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
ACTGACGATGAGAAGGCCATGTTCAAAGTGTGCATGAGTGATGTTAAACAATTCATTCAAATGAAAGCAACAGAATTCGCTGTGAAGAAAAAG
Seq A exon
AAGAAAATAAAAAATAAAAAAAGGACTTTACGGGATGTGTTTAGCCTTAATACTGACCTCCAAAAAGCTGTCATCCCATGGATTGGTAATGTGATCATATCTACTCCAGCGAATGAAGCCATCTTTTGTGAAG
Seq C2 exon
GGGATATTGTTGGAATCAAAGCAGCAAGCATCAGGCTCCAGAAGACATCAGTGTTTACATTTTTTATCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067673_MULTIEX1-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGACGATGAGAAGGCCATG
R:
AATGTAAACACTGATGTCTTCTGGA
Band lengths:
154-287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]