DreEX0075353 @ danRer10
Exon Skipping
Gene
ENSDARG00000029252 | ssb
Description
Sjogren syndrome antigen B (autoantigen La) [Source:ZFIN;Acc:ZDB-GENE-030131-223]
Coordinates
chr6:3550051-3556871:+
Coord C1 exon
chr6:3550051-3554770
Coord A exon
chr6:3556179-3556294
Coord C2 exon
chr6:3556810-3556871
Length
116 bp
Sequences
Splice sites
3' ss Seq
TTCAACTACATTTCCCATAGTTC
3' ss Score
6.53
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
TATATAGAGCAAGCCTATAGAAATGAATCATGTCCCCGTTATACCTTTTTCCCCAACTAAATGTTCAACAGAGACTCTTGTGCAAGAGATGTTTAAAAGCCATCCGAGCGGTCGTAACCCGTGCTGTGCTGCTGATAGCAGTTTTTGGGTGAGACGTGCTCGATTTAGATAAACAGTGTTGTGAATGTTTGTTCCTGATTGAACCTGAATATTTACTCAGAGATGAACGGAGAACTGTCAGGTGTTGAGGATTTACATCTGTCAGGAAAATGCAGTTACATGAGGCGCGTTCTCCTAAACCAGAGCTTGTTCCTGTTAATGTTTACGACAGATCTTGTGTCCTTTGTACTATCTGCACACAGGCCATGCACATGTTTAGTGTCCTATTGAAAAGGAATAAAATAACCACTGAATTATGGCCTGTCTCTTGTTGTCTGACTGGAGGTGTAATAGGAGTGGACGGCTACACTGTAATTCAGCGAAGCACTAATGAAGTTATG
Seq A exon
TTCTCAACTCGGTCTAAATGATGTCATAACTCCACGACGGCATACCTCACTTCACGTTCACTCGGCGTTGAGTGTGGCGTTTCATCGCTATCAGACAAAAACAGAGCGCAAATAAA
Seq C2 exon
CAAAGATGGCTGACAATCAGGAAATGTCTCCCCTGGAGAAGAAGGTGGCGGAGCAGATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029252_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.526
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0538312=La=PU(8.5=26.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGGCGCGTTCTCCTAAAC
R:
TCCAGGGGAGACATTTCCTGA
Band lengths:
258-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]