DreEX0075500 @ danRer10
Exon Skipping
Gene
ENSDARG00000061173 | st14a
Description
suppression of tumorigenicity 14 (colon carcinoma) a [Source:ZFIN;Acc:ZDB-GENE-030131-6496]
Coordinates
chr18:44538745-44539532:+
Coord C1 exon
chr18:44538745-44538927
Coord A exon
chr18:44539090-44539180
Coord C2 exon
chr18:44539429-44539532
Length
91 bp
Sequences
Splice sites
3' ss Seq
GTTTAAATGTATTTTTGTAGATA
3' ss Score
6.71
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GAAACCTGCATGTCAAGTTTGTATCTGACTGAAGGAAAATACGGTCTGTGTTTTAAAACCTAGTACGCACACTAGCTAGATATCTCCATTAGTCTACTGGCGCGTTCCTAAAAGAGCCCTAATTATGTGGCCTAAGTAGGGAGCACACTACAGTCTGAAGACACCTCCGACGCCCGTGTAAAG
Seq A exon
ATAACGTCCTCACCTGCAGTGCTAGTATCGTCTGAATTAGTCACTCCCATTGTAACGCCAATCTCTCCGGAAATATCTTCTCATCTCACAG
Seq C2 exon
AAGTGGAAGTGTGAGGAGAAAGGTGTGTTGATTTTGATTCTGCCAGTGGTCTCTCAAAAATGGACCCTATGGATGGAGGAATGCGTTACACTCCTGGTTCTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061173_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.443
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0008921=Trypsin=PU(2.7=54.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGCGCGTTCCTAAAAGAG
R:
CGCATTCCTCCATCCATAGGG
Band lengths:
173-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]