DreEX0076288 @ danRer10
Exon Skipping
Gene
ENSDARG00000007603 | stxbp2
Description
syntaxin binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2482]
Coordinates
chr3:52993806-52999290:+
Coord C1 exon
chr3:52993806-52993890
Coord A exon
chr3:52995520-52995541
Coord C2 exon
chr3:52999160-52999290
Length
22 bp
Sequences
Splice sites
3' ss Seq
TTCCTGTTCTTGTCTATCAGCTG
3' ss Score
8.46
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGGGCCAAAGGAGAATTTCAGCCTGGCTGAGATGGTGATGGATCGTCTGAATGCACACAAAGCAGACAATCCCAGAATGGGAGAG
Seq A exon
CTGATATTTTCCTGAGCTTCAG
Seq C2 exon
GGCACAGATAAAGCTCGCTCTCAGCTGCTAATAGTGGACCGTGGGTATGATCCCGTCTCTCCAATTCTTCACGAGCTCACCTTCCAGGCGATGGCCTACGACCTGCTAGACATTGAACAAGACATTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007603_MULTIEX1-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=0.000 C2=0.023
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(14.3=100)
A:
PF0099518=Sec1=PD(0.1=0.0)
C2:
PF0099518=Sec1=FE(7.7=100)
Main Inclusion Isoform:
ENSDART00000031234fB6367
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGAGATGGTGATGGATCG
R:
ACCCACGGTCCACTATTAGCA
Band lengths:
107-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]