DreEX0076300 @ danRer10
Exon Skipping
Gene
ENSDARG00000008142 | stxbp3
Description
syntaxin binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2833]
Coordinates
chr23:1682795-1685133:+
Coord C1 exon
chr23:1682795-1682880
Coord A exon
chr23:1683002-1683010
Coord C2 exon
chr23:1684985-1685133
Length
9 bp
Sequences
Splice sites
3' ss Seq
TTCATCCCTCTGCCTGTCAGAGT
3' ss Score
7.3
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GACGCAGTGGAAAATAAACTGGATATCAAAGACTGGCCGTTTCAGTCTGAATGTCCGTCTGCGTGGAACGGCTCTCGGGCTGTAAG
Seq A exon
AGTGCTGAG
Seq C2 exon
TGCACGGCAGAAGCACAAGGGCAGCTCTCCAGGGGACATGAAGAACGGCTCGCGCCTCATCATCTTCGTTCTGGGTGGAGTCAGCTACTCTGAGATGCGCTGCGCTTATGAAGTCACCAACACTAATAAATCCTGTGAGGTCATCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008142-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=0.000 C2=0.225
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(5.1=100)
A:
PF0099518=Sec1=FE(0.5=100)
C2:
PF0099518=Sec1=FE(9.2=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCGTTTCAGTCTGAATGT
R:
TCTTCATGTCCCCTGGAGAGC
Band lengths:
97-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]