DreEX0077219 @ danRer10
Exon Skipping
Gene
ENSDARG00000077073 | tanc1a
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1a [Source:ZFIN;Acc:ZDB-GENE-130530-819]
Coordinates
chr6:11809286-11812555:-
Coord C1 exon
chr6:11812423-11812555
Coord A exon
chr6:11809471-11809500
Coord C2 exon
chr6:11809286-11809377
Length
30 bp
Sequences
Splice sites
3' ss Seq
TGTCACTTTCACTTCTAAAGGCT
3' ss Score
6.82
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
GTGCATTATCTGGTGGAATGTGGAGCCGCGATTGAACACATGGACTACAGCGGCATGAGACCTCTGGACCGGGCCATCGGCAGCAGAAACACCTCAGTAGTGGTCACTCTGCTGAAGAAAGGGGCTAAACTGG
Seq A exon
GCTACCGAACATCTCCTTATGAACGCTCAG
Seq C2 exon
GTAACGCCGCTTGGGCCATGGCCACCTCCAAGCCAGACATCCTCATCATACTTCTGCAGAGGCTCATGGAGGAGGGAAACCTGCTTTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077073_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002325=Ank=PD(45.5=33.3)
A:
NO
C2:
PF134141=TPR_11=PU(15.2=38.7)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCTGCTGAAGAAAGGGGC
R:
AAGCAGGTTTCCCTCCTCCAT
Band lengths:
115-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]