DreEX0078395 @ danRer10
Exon Skipping
Gene
ENSDARG00000042835 | tfdp2
Description
transcription factor Dp-2 [Source:ZFIN;Acc:ZDB-GENE-030219-104]
Coordinates
chr15:4500599-4537240:-
Coord C1 exon
chr15:4537121-4537240
Coord A exon
chr15:4535987-4536091
Coord C2 exon
chr15:4500599-4500673
Length
105 bp
Sequences
Splice sites
3' ss Seq
GTGCATTGTTGATCTGTCAGGCA
3' ss Score
3.37
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
Exon sequences
Seq C1 exon
CACTCAGGAAGTGAGTACAGGACTGAGCAGTTTTACTGCGCTTTCACTCTCATACATTCTCAAGTTGCTTGTTTTCCACTTTGACAGAACTTCTCAACACATTTCGCTCACAAATACAAG
Seq A exon
GCAGCGAGAGCGCGCCGGGCGCTGCTTCGTTGGTTTTCTTCTGCAGCTTTTGCACATTTCCGCTGCTCTGGAGGACGGTCCTGACGAGATATTCGTCGACTTTTG
Seq C2 exon
GGGACTGTGCAGTTCTGAGCAGGAGGTATTTGAACAGAAAGAGCCCCTGTCATCATTAATATGATGGCCAACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042835_MULTIEX1-1/10=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGAGTACAGGACTGAGCAGT
R:
CGTGTTGGCCATCATATTAATGA
Band lengths:
186-291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]