DreEX0079088 @ danRer10
Exon Skipping
Gene
ENSDARG00000042467 | tlk1a
Description
tousled-like kinase 1a [Source:ZFIN;Acc:ZDB-GENE-071008-2]
Coordinates
chr9:3598473-3611967:+
Coord C1 exon
chr9:3598473-3598544
Coord A exon
chr9:3607571-3607609
Coord C2 exon
chr9:3611892-3611967
Length
39 bp
Sequences
Splice sites
3' ss Seq
TTCCTCTTTTTCTCTTGCAGGGT
3' ss Score
13.55
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
ACCTTGACAAACAACGAATGTTCCAATCACAGCTTTGGAAGTCTGGGCTCCTCCAGTGATAAAGAGTCAGAG
Seq A exon
GGTTCAGATGGGAAAAGAGGAAGTTCTCCTGCGTATTCA
Seq C2 exon
ACTCCCGAAAAGAAGCACTCGGAATCGTCACGGGGCAGGAAGAGGAAAGCTGACATCCAATCAGAGAGCAGTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042467_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTTTGGAAGTCTGGGCTC
R:
TGCTCTCTGATTGGATGTCAGC
Band lengths:
113-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]