DreEX0080914 @ danRer10
Exon Skipping
Gene
ENSDARG00000056985 | tpte
Description
transmembrane phosphatase with tensin homology [Source:ZFIN;Acc:ZDB-GENE-030131-5503]
Coordinates
chr10:24721082-24722673:+
Coord C1 exon
chr10:24721082-24721403
Coord A exon
chr10:24721486-24721617
Coord C2 exon
chr10:24722599-24722673
Length
132 bp
Sequences
Splice sites
3' ss Seq
TGTTACATTTCTTTATGCAGATA
3' ss Score
9.18
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
AAAGCACCACATTTTCAGTCCCCGTCCATATTCATTTTGTATGAGGAAGTTAAAAACCGCTACGTCTGCAGCAGGAGTGAAGAAAGGGGCGGTGTGAATGTGGATGTGGATGGAAGAAAACTATTGCTAACCTTCGAACCTCCTTCCTTTGTTATCGCAGAAAATCACGGGACAGTCACCGCTTGTAAAGACAACCATGATGGAGACAATACGCCGAAAGACTGTTTGAGGAATATGTGACTGTTTAGAGAGCAAAAAATAAAGCTGCGAGTCAAGCAAAGGGAAAGGAAACAGTTTTCCCGGATGCGCTTCAGTCTGGCTG
Seq A exon
ATATTTAATATAGTAGATTACACTTGATTCAGAAAGTGCAGACGACGTTTAATGGAATCCATGGAATAATATATCCTTTAATCCACATTTGAAACTTTAAATTCGGACCCTTTGAGAATTTATTGATCTGAA
Seq C2 exon
CAATACTTGAAATATTCCCGTAAAGATGACGTCTGTGCATTTTAACCCTGGGTTAGATTCCAAAGAAGTTAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056985_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAACCTTCGAACCTCCTTCC
R:
ACCCAGGGTTAAAATGCACAGA
Band lengths:
250-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]