DreEX0080984 @ danRer10
Exon Skipping
Gene
ENSDARG00000017240 | traf5
Description
Tnf receptor-associated factor 5 [Source:ZFIN;Acc:ZDB-GENE-071120-3]
Coordinates
chr22:38359918-38364193:+
Coord C1 exon
chr22:38359918-38360010
Coord A exon
chr22:38360563-38360610
Coord C2 exon
chr22:38364074-38364193
Length
48 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTTTGTGTTCAACAGAAG
3' ss Score
10.02
5' ss Seq
ATAGTGAGT
5' ss Score
6.97
Exon sequences
Seq C1 exon
GATAAAAGGGGAAAAGTGCAGGTGCATGAAAACACAGAGTTCAGTGCACATGTCCGACTCGTCCTTGAAAGTAACACCAAACTGGAGAAACAG
Seq A exon
AAGAAACACAATCGTAATGGTGTATAACCACTTGAGGGAGAGTAAATA
Seq C2 exon
ATGGAGCAGCTGCAGCAGGATATGCTGGTCCAGCAGGGGGTGCTGAAGGACAAGAGTCTGGTGGTCAGCAGCCTGGACCGGGACGTCTCCCTCTGTGACAACACACTTACTACATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017240-'9-8,'9-7,10-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=1.000 C2=0.048
Domain overlap (PFAM):
C1:
PF0217613=zf-TRAF=PD(13.6=25.8),PF057016=WEMBL=PU(18.1=93.5)
A:
NO
C2:
PF057016=WEMBL=FE(24.4=100)
Main Inclusion Isoform:
ENSDART00000040550fB6787
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATGTCCGACTCGTCCTTG
R:
TTGTCACAGAGGGAGACGTCC
Band lengths:
148-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]