DreEX0082664 @ danRer10
Exon Skipping
Gene
ENSDARG00000061222 | uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:ZFIN;Acc:ZDB-GENE-121120-4]
Coordinates
chr6:53033745-53038573:+
Coord C1 exon
chr6:53033745-53033836
Coord A exon
chr6:53034709-53034740
Coord C2 exon
chr6:53038317-53038573
Length
32 bp
Sequences
Splice sites
3' ss Seq
CCATGTGGTCTCCCACCCAGGTA
3' ss Score
8.02
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
GAGGAGCATAAGCTGAAGATCAGCGGCTTGTATTACGGACCTGCTGTGTTGTACAGTGATCTCTCCAATCATAGCGATCGCATGAAGCTGAG
Seq A exon
GTACTGACCAGGCTCAGCCCTGCTTAGATTCA
Seq C2 exon
CATTAGTGATTTGGTGCGCCTTGCAACCAAGCATGAAGTTGCAGATCACCAGCAGATGTTGGAGATCATTCCCTCGTTTGAAGAGGATGAAGACTGCCTGACGGTCCCGCCGATCAGATACCTGCTCAGGTGAAGCTGGAGACTGCCAAATCACATTTACATTTACAAATCACATTTACTCACACTCTTAACTACTCCGTCAGTTCATACACTGCAGAAATTGTTGCTAAAAATAAAAGCAAATGTGCAAAATTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061222-'26-24,'26-23,27-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF093585=UBA_e1_C=FE(23.4=100)
A:
PF093585=UBA_e1_C=PD(1.1=33.3)
C2:
PF093585=UBA_e1_C=PD(29.7=84.4)
Main Inclusion Isoform:
ENSDART00000155831fB6929
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCGATCGCATGAAGCTGAG
R:
GACCGTCAGGCAGTCTTCATC
Band lengths:
127-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]