DreEX0083490 @ danRer10
Exon Skipping
Gene
ENSDARG00000040869 | upp1
Description
uridine phosphorylase 1 [Source:ZFIN;Acc:ZDB-GENE-050306-2]
Coordinates
chr16:16302371-16303711:-
Coord C1 exon
chr16:16303553-16303711
Coord A exon
chr16:16302728-16302842
Coord C2 exon
chr16:16302371-16302580
Length
115 bp
Sequences
Splice sites
3' ss Seq
GAATTTTCTTTGTGTTCTAGCAT
3' ss Score
8.25
5' ss Seq
TAGGTAGAC
5' ss Score
3.78
Exon sequences
Seq C1 exon
TTTGTGTGTGTAGGGGGAAGTCCATGGAGGATGAAATCTTTCACTGAATACATTGCCAAAGAACTGGGACTGGTGGACCCCAATGCAGAATACCCAAATATATGTGCAGGAACTGATCGTTATGCCATGTACAAAGTGGGACCTGTGTTGTCTGTCAGT
Seq A exon
CATGGCATGGGCATTCCTTCAATCTCTATAATGCTACATGAGCTCATCAAGCTGCTGTATCATGCTCGCTGCACTGATGTCACCGTAGTGCGCATTGGAACTTCAGGTGGAATAG
Seq C2 exon
GTTTAAAGCCAGGGACTGTAGTGGTTACCAAACAATCAGTGGATTCTCTGTTCCAGCCTCACCTTGAGCAGACTATTCTGGGTAAACCAGTGGTCAGGAGCACAGAACTCGATAAGGAACTTGCCGAGGAGCTGCTTCAGTGTGGAAAAGAGCTTGGAGAGTTTGAGATCATCATTGGAAACACAATGTGCACTCTTGACTTCTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040869-'3-7,'3-6,4-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0104815=PNP_UDP_1=FE(29.1=100)
A:
PF0104815=PNP_UDP_1=FE(21.2=100)
C2:
PF0104815=PNP_UDP_1=FE(27.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAGAACTGGGACTGGTGG
R:
TTTCCACACTGAAGCAGCTCC
Band lengths:
252-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]