DreEX0083961 @ danRer10
Exon Skipping
Gene
ENSDARG00000022187 | usp6nl
Description
USP6 N-terminal like [Source:ZFIN;Acc:ZDB-GENE-041210-192]
Coordinates
chr4:24054981-24058957:-
Coord C1 exon
chr4:24058805-24058957
Coord A exon
chr4:24058525-24058585
Coord C2 exon
chr4:24054981-24055124
Length
61 bp
Sequences
Splice sites
3' ss Seq
CCCTTTCGCTTCAAACATAGCCT
3' ss Score
5.03
5' ss Seq
CCGGTGGGC
5' ss Score
6.21
Exon sequences
Seq C1 exon
AAACACTTTTGAAGCTGTCTATGGAGGAGCTGGTGAAGTTTCTACAGGTGACTCTGTCAAACGATTTCTTTTTTGAGGACGACTTTGTTATAGAGCAGCTTCAAAACTCCATGTCTGAGCTCAGACGGTCTAAACTGGAGCTGCCACCTCCAG
Seq A exon
CCTCTGCTTACACTAGTGGGTCTGGGAAAGGGGGGCGCCAACCCTCCTACAAAACCAACCG
Seq C2 exon
GTAAGGAGGACGAGTACCCTAAGAAACCATTAGGTCAGCTTCCCCCTGAGCCTCCAGGATTGGCAGCAGCAGCAACCAATCATGTGGCTAACGGGCAGCCGGTGGGACAAACAGGAGAGGGTCTCCCCCCTCGTGGTCCAAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022187_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.168 A=0.810 C2=0.887
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PD(1.4=5.8)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000143571fB7023
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAAACTGGAGCTGCCACCTC
R:
AGACCCTCTCCTGTTTGTCCC
Band lengths:
148-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]