DreEX0084187 @ danRer10
Exon Skipping
Gene
ENSDARG00000075962 | vav3b
Description
vav 3 guanine nucleotide exchange factor b [Source:ZFIN;Acc:ZDB-GENE-070912-251]
Coordinates
chr2:16349303-16353104:-
Coord C1 exon
chr2:16353017-16353104
Coord A exon
chr2:16352846-16352878
Coord C2 exon
chr2:16349303-16349411
Length
33 bp
Sequences
Splice sites
3' ss Seq
CTAAGCTGCTTTTTTTTTAGGAA
3' ss Score
8.81
5' ss Seq
TCTGTATTT
5' ss Score
-5.79
Exon sequences
Seq C1 exon
GTACAACAATGATGTGAAGCACCTTAAGGTCCTCACTAAGGAGGGCTGTTTCTACATTGCCGAAAGCAGGACGTTCAAGAATGTGTTG
Seq A exon
GAAACTAGAGCATTTGCTGATCTGCATATTTCT
Seq C2 exon
GGGCTTGTTGAATATTACAAACAGCACTCTCTGAAAGAGGGTTTCCGTACTCTGGACACTACTCTGCAGGTTCCCTTTAAGGAACTTGGTACAGGACTCCGTACTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075962_MULTIEX1-5/5=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0063014=Filamin=PD(5.4=33.3),PF0001719=SH2=FE(38.7=100)
A:
PF0001719=SH2=PD(1.4=8.3)
C2:
PF0001719=SH2=PD(6.7=13.5)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGCTGTTTCTACATTGCCG
R:
ACCTGCAGAGTAGTGTCCAGA
Band lengths:
118-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]