DreEX0085627 @ danRer10
Exon Skipping
Gene
ENSDARG00000030722 | xirp1
Description
xin actin-binding repeat containing 1 [Source:ZFIN;Acc:ZDB-GENE-050221-2]
Coordinates
chr2:24090606-24104455:-
Coord C1 exon
chr2:24104399-24104455
Coord A exon
chr2:24097083-24101534
Coord C2 exon
chr2:24090606-24094266
Length
4452 bp
Sequences
Splice sites
3' ss Seq
CATACTTCTTTGCCCCCAAGATG
3' ss Score
5.38
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GGCAGTGTGGTCCACGAGCGATTCAACTCAAGTGGAACGACAAAAAAAGGAAGCAAG
Seq A exon
ATGGCAGAAGTAGCCAAACAGAAAAAAGCTACAGAAGCAGTCTGTGGAGATGAGGATTTCCCTCCACCTCCACCTCCTCTTCCAAGACCTCAGGTTCTGGAGTCACTTCAAAAAGATCTAAGCCAGAACTTCCTCCCCGTACCACCTCCAAAAGAAACCTTCTCAGAGATCTACCAACAACGACAAAAAAGTGAACTGAAGCGCCTTTTTAAACACATCCACCCTGAACTGAAGATGACTGTTGATGACGTTGTAGATGACGAACTAATTGATGCAATAAATCCTCAAGCAGCAGATGCAGCATATCAGGGAGAAGTCCAATCCATGCGGTGGATCTTTGAGAACTGGACTCTTGATAATATTGGAGACCCACATGAAACTAAAAAACTACTCTGTGAGGAAAATCCTCAAGGTGGGGATGTGAAGGGCAAATCCTCTTTGTTTGAGCATTCAACATTCGACAGTCAGCATGCAGCAGGTGCCGAGAGAGCAGGTGTAGTCAGAGGAGATGTTCGCACAGCCACCTGGTTGTTTGAAACACAGCCTCTAGATTCAATCAGCAAGTCAAAGATAGAGGATGAGGAAATTGTGGAGGTCGTCTTGAAGGAACCTGTTCAGAAGGGTGATGTGACCGGCGCACGTCGTCTGTTTGAAACCAAACCACTGGATTCTTTAGGTCGCTGCTGCTCTGTCGAAGACCAACATTTCCTAACATTAAAATCAGAACTCCAAGAGAACAAAGGAGATGTGAAGAAAACAGTCAAACTTTTTCAAGCAGATCCCTGTTGTGCGCTTAGGGATAGCAATGGTAAAATCCATGAAATCAAATCAATCTGCAGAGAAGAAATCATGAGCAGTGACTTTAAAACTGCACGTTGGCTTTTTGAAACTCAACCCTTAGATCACATTAATGAAGGAGCTCATGTTCAGATAATTCGAGGGATATCTCTTGAAGAAGCTCAGAGAGGCGGTGTTGATAAGAAAAAGTGGATGTTTGAGACGCAGCCGCTTGATGCAATTCACGAAGGTGTTGTGGAAGAGCAAAAGTTTCAAGGAACAGCAGTGGAGGGTTTCTCTGGAGCAGCAGATGTTCATAACAAACTACAGCTGTTTGAAAACCAGCCCCTGTCATCCCTTAAAGGAGATTCTGAGGGTGACGTTTTAGAGAAGGAGGCAATTGTTGGAGGAAATGTTGGATCCACCCTATGGCTTTTTGAGACTCAGCCCATGGACACTCTGAAAGATAGCTACGAGGTGGGACGTCTCCAGAAGGTTATGGTATCAAGTGATGAAAAAGGAGAAGTTCAAGACAAAAGGATGCAGTTTGAGAAGTCCACTGCTGGTAAAACAGCAGGTGACAGTGGAAACAAAGTTCAAAATGATGAGAAAGGAGATGTGAAAACTTTCAAAAGCCTTTTTGAGACATTACCTCTTAATGTTTCCGAGAAAGCACAAAGTCAAATTCATGACATTACATCTGGGGATGTCAAAGGCCACTGCTCACTGTTCGAAACAACACCACTGTATGCGATTAAAGACTGTGCTGGAAAATTCCACGAAGTTACCACTGTCAGTAGAGAAGAATGCATTAAAGGCAATGTACAGAATTACAAATGGATGTTTGAGACGAGACCCTTAGACCAATTTGAAGAAGGTAGCGGAAAAGTAGAACTCATCAAGGGCATTACAAGGCAAGAAGACATGACAGATGACACGAGGACAGCCAAATGGATGTTTGAAACACAGCCTTTGGATTGCATGAGTTTAAATAGTAGGACAGATGTAGACTCGACACAGAAAGAATTTAAAAAGAGTAATGTGAAAACATGCAAATGGCTGTTTGAGACAAAACCAATGGACATGTTGTATGAAAAATCAGAAGGGAAGCAGGATGTAGAACCAGTACCGAAAGCTGATGTGAAGTCACACACTTGGCTTTTTGAAACACAACCACTGGATAACATTAAAGACAAGGAGAACCTTGGTTTGAAACTGTGCAGCACTGTGCAGGAAGACGTAAAGAGTGATGTGAATGTGAAGACAGTGAAACACCTGTTTGAAACTGAGCCTTTAGACAGAATCACAGATCAAGCCGATTCTGGCCAAAACGTAAGGTGTGTCAGCCAGGTGGATATGCAGTCTGGAGATGTTTCACGTGTCAAGGAAATCTTTGAATCTAAATCGCTAGGAACTGAGTCTTCCAAATGGTCTGAGGAGCAGAAAAATGAAATTCAGTCAGGATCTGTCCACAAATTCACTTGGTTATTTGAGAATCAGCCTATTGGTGACATTAACGAGAAAGAGGAGAGAATAGTGTCATGCGATGTTGAGGCTGGGGATGTTGGAGGCAAGAAGTTTATTTTTGAAACCCTCTCTCTGGATAAGATTAAAGACAAAGATGAACTACTTGAGCATCCGTCAATGATTATAGAGAAGCCTTTGAGCAGTAGTGTTAATGTGAAATCCAACACAATGCTTTTTGAATCCCAGCCATTGTATGCTATAAGAGACAAGGATGGGCAGTTTCATGAAGTTACCACTGTAATGAAGGAGGAAGTCATGAGAGGAGATGTCAGGGGTGCAAGATGGATGTTTGAAACCAAGCCACTGGATACTATTCAAGCAGACAAGGAAATCTACGTCATCCGTGCAGTTACGCAGGAGGACGTGCACAAAGGAGATGTGAAATCTGCGCGATGGAAGTTTGAGACTCAGCCTCTTGACTCATTTACACCTCACGAAGGGCCCTCTGTGCGTGTTGTTGAAGATATAGGCAATGAAAAGTGTGTGCAACAAAGCAGGCAGCTTTTTGAGACAGAGCAAGCATCCCAAAAGAAGTTTGTGCGAATGGTGAGCGTTACAGATGTTCAACAAGGTGATGTACGTACCTCAACCTGGCTTTTTGAGAATCAGCCTATTGATACTCTAAAAGGTGAACCAGATGAGCAGAACAACTTGACAGCTGTACATAGAGAAGATAACACTAAGGGAGATGTGAAACGCTGCACTTGGTTGTTTGAATCACAGTCCTTAGATAAAATAAAGGACAATAAGCCAACTGAAGAGTTGGTTTCATCAAGGGAAGAAATTCCCAAAGCTGATGTCAAAAGTACAACCTGGTTATTTGAGACCACACCACTTGACAAAATCACTGTTGAAAGTGTGACAGACATACTATACAGACTTTGTCATAATTCCTTCATTCATTCCAGCGGAATCATCATCCAAGCAAATGATTACAAGTATGTAAACATGGCAAAATATCAGATTATGAAGGATGAGGGGCCCAAAGTCCTAAAGGAAGAAGTTGTTGAAGGAAACATCAGGAACCTAATGTTGCAGTTACTGTTCAAACCCAATATTAAACCTATGGTTGTCCTCCTTAAAGAAGACGAACAAGGCAAGATGCACAGTACAGTACTTGAAATCCCATTTCAACAGCCAGGATCTGCAACCAACCCTGAGGCGGAATGCAAGACCCAAGAAGCAGTTAAAATTATTGAGAACTTGCTGGTTCAACAAAAGGAAATCAAGACAGGTTTGGTCATGCAAGAATCTGAAGGTGGGCAGCCAGAAATGACAGTATATTCCCTTCACTGTGAAAGCAGCTTAACTGAGTCGCAAACCATCACGCGAGGAGACGTCAAGTCCACCATTGGCAACCTCCTTGCCACAGTCCACAGCCAGCAGACTAAGCAGTCTTGCAGAATGGAAGAAATCGAGAGGGGGAATGTTAATTTGTATAAAAGCTGCATTGAAAAAGGCGACCTTAAGAGTCTACAGCGAGAACTTTCTGAAGAAGATTTGGTCACGTCTTGTAGAGACCAAATCGAAATTGTTCAAGGTGATGTAAAGGAAGCGATGCGACACCTAAGTCAACAAAGAGAACAAGTTGAAAGAACAATCTTGGATGTTGTACCAGGAGATGTGAAAAATGTCAAAAAGGTTTTCTCTGATGTCTGCACAGACCTGAGCATTGGAAACTGTGTGCCAAGAGAGGAGATAGTCCGAGGTGACATTTTGTCAGCCAAACAGCAACTTGGTGAGGCAGTTAAACAGCAAGTCATGGTCCAGAAGGAGGAAATTGTTTCTGGAGACATTAAGGCAACACTTGAATCCTTGGAGCGAGCTAAACAACAAAGCATGCAGGTGGAGCGTGAAGTCATAAAACCAGGCACCATTTATGATCTGAATGTAGAGGCAGAAGAAATGTGCTCAGAAGAAAATGAAAGTAAATTAGTTAAAGAGGAAATCATTCCTGGGGATATTAAGGCTGCCAAAAGATCCCTTGAGAGGGCAAAGAATCAAAGCATGAAGGTAGAACGAGAACCAATCACACCTGGAAAGCTATATAACCTGAATGAAACATCTCAGTGCCAAAGCAGCACAACAGTGGAGCAGTCTACAACATCCACCTACAGTAACCACCGGATTACTACAACATTTCGAAAG
Seq C2 exon
TTCCTGTCACCTGCTAAAGAGATGTGCTCTGCCTGCCTGATGCCAGTTTACCCAATGGAGAAAATGGTGGCAGATAAGCTAATCCTACATATGAACTGTTTCTGCTGCAAATACTGTAATAAAAAGCTAAGGTGAGAGAGGTTGCAATCATCTATTTTAGATTCGAAAATAAATTTTCAAGATATTATAATACAAATCAGTAATGAAAACACTGGACGATTTTACCACACCTGTAAATCAAACCATGCTGAAAAAAAGGTTGTTGGGTTTCAATGGTTCCTAATTAAAATTAATCAACTTTTAGCAGTAATTTATTTTTATTATTTTTTTTAATAGTGATTTTGGACAAATTGAATTTGGATTTAATGGTTTAACCAGCCACCAATAGAAGGTAACAAATTACCAGAAAGAAACCTGCAGGCACCAATATCCCATTAAAACCATTACAAATTCTATGAGGTTTTGTTTTTTTCAGCAAGCTAATGACAACATAAATTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000030722_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
PF080437=Xin=WD(100=1.1),PF080437=Xin=WD(100=1.1),PF080437=Xin=WD(100=1.1),PF080437=Xin=WD(100=1.0),PF080437=Xin=WD(100=1.1),PF080437=Xin=WD(100=1.1),PF080437=Xin=WD(100=1.1),PF080437=Xin=WD(100=1.1),PF080437=Xin=WD(100=1.1),PF080437=Xin=WD(100=1.0),PF080437=Xin=WD(100=1.1),PF080437=Xin=WD(100=1.1),PF080437=Xin=WD(100=1.1),PF080437=Xin=WD(100=1.1),PF080437=Xin=WD(100=1.1),PF080437=Xin=WD(100=1.1),PF080437=Xin=WD(100=1.1),PF080437=Xin=WD(100=1.1),PF080437=Xin=WD(100=1.1),PF080437=Xin=WD(100=1.1)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]