DreEX0085633 @ danRer10
Exon Skipping
Gene
ENSDARG00000091090 | xirp2b
Description
xin actin-binding repeat containing 2b [Source:ZFIN;Acc:ZDB-GENE-030521-26]
Coordinates
chr9:49771193-49778876:-
Coord C1 exon
chr9:49778790-49778876
Coord A exon
chr9:49774679-49774792
Coord C2 exon
chr9:49771193-49771262
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTGGTGTTTGACCCGTACAGCAC
3' ss Score
5.31
5' ss Seq
ACGGTGACA
5' ss Score
3.16
Exon sequences
Seq C1 exon
GAGGTGTCAGATTCATCAGTTTTGAGTGTGTCGAGCAGCGCAGCGAGTCGTCAAGCCTCACAGCAGGTCTTCCTCCAGGATGAAAGG
Seq A exon
CACCTCAGAGTCTGTAATCCTGTTGCCATTGGCCAGATCGAGCCGATCCTTCTCCTGTCAGTCCTCTCTGTTGCTCCTGCGACAAAAACAATGAATGACCATGACAGCAGCACG
Seq C2 exon
TCTACACGTGATCAAATCGCTCATAAACGGGAAATTATGTCCAGTTATGAGAATCATAACAATCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000091090-'2-2,'2-1,4-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.625 A=0.256 C2=0.938
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF103674=Vps39_2=PU(23.9=87.5)
Main Inclusion Isoform:
ENSDART00000148707fB7145
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGTCAGATTCATCAGTTTTGAGT
R:
TCTCATAACTGGACATAATTTCCCGT
Band lengths:
138-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]