DreEX0086065 @ danRer10
Exon Skipping
Gene
ENSDARG00000013492 | zbtb34
Description
zinc finger and BTB domain containing 34 [Source:ZFIN;Acc:ZDB-GENE-050624-2]
Coordinates
chr8:33123270-33145445:-
Coord C1 exon
chr8:33145351-33145445
Coord A exon
chr8:33142951-33142961
Coord C2 exon
chr8:33123270-33124831
Length
11 bp
Sequences
Splice sites
3' ss Seq
TGATATTAATGCTTCTGAAGCAG
3' ss Score
1.12
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
AAATAGCAACGGCGGAGGAGCAGAGCACAGCTGGGGAAGGAGGAGGCCAAAGCGAGTCGCTGTGCAGAGGAATGGCCGACATTTGATCGGAGAAG
Seq A exon
CAGCACACAAG
Seq C2 exon
GTTCTCTACAAACCAGGAGAGACATCACTGAGCCATGGAGGACTGTGGTAGCCTCATAGAGTTTGATGTACCCGAGTTCAGCAACACCGTCCTGAACCAACTCAATGAGCTCCGTCTCCAGGGCAAGCTATGCGACATCATTGTGCACATTCAGGGTCAGCCGTTCAGAGCCCACAAGGCTGTCTTGGCCGCAAGTTCACCATACTTCCGTGATCATTCATCACTTGGCACGATGAGTGGGCTCTCCATCTCTGTAATCAAAAGCCCTGAGGTGTTTGAGCAGCTGCTAGCCTTCTGTTACACTGGCCGAATGGCGTTGCGTTTACGTGATGTCATCAGCTTCCTCACTGCTGCCAGCTTCCTCCAAATGCAGGCTGTGATTGACAAATGCACGCAGATTCTTGAGGGTATTCACTCCAAGATCAGCATACCTGCCTCTGGTGAGATCGATCCAGACAACGAATGCACCACCTCAAGGGCTGGACGCAATGGTGTGAAAGACAGAGGAATCTTTGTGAACCCCACCGAGATTTCACCATCCCACTTTTCTCGTCAGAATCATTGCATGGAAGGGCAAAGCTCAGGTAAAGGAATAGCAGAGGAGGGTCAGTCAGACAGAGGGAGCAGCGACAGCATATCAGAGCAAGAGGCATCCATGGAGGTCGAGTCTGAACAGGTGGAACTCATCGGGAAGGATGGGCAGGTGACCGATGTCCATATTAAGCTGGAGAAAACTGACCGGCCAAGCTACTCCGATAGCTCATCGGCAGGGGACGACGGATATCACACAGAGCTAGTGGATGGTGAACAGGTGTTGGCCGTCAGTGTGGGATCCTACATGCCCGTGCTTTCCTCAGTCGGATACACTTACTCTGCACTACCTTCCTCATGTTTTGTCAGCCTGAGCTCCTCTAGCCCGTCTCGTTCCTTGCTCAGCAGTGTTCGAGGTGGTCGTGCCCGACCCAAACGTCCCGTGCCTCTTCCAGTTGATATGCTAACTCAACCTAAGCCAGGTGCTGACGAAGGAGAGCCACCGGCGACAACAGCTACCTTTGAGAATGATGTAAGGGAGCGTAGTTTACGAGGACAGTGGTACCCCTACAACGAGAGGCTCATCTGCATCTACTGTGGCAAGTCCTTCAATCAAAAGGGCAGTCTGGACCGTCACATGCGTCTACACATGGGCATCACACCCTTCGTCTGTAAGTTCTGCGGCAAGAAATACACTCGCAAAGATCAGCTGGAGTACCACATCCGTGGCCACACAGACAACAAACCCTTCCATTGCCAGATCTGTGGCAAATGTTTTCCCTTCCAAGGCACACTCAACCAGCACTTGCGCAAGAAGCACATGACCTCTGGCACAGAAATTAACAATCACACCGACCTGCTGGAAGAGGCACCGGATGGCCAGAGAGGAGAGCAAGAGGATATCTCAGAGGGCGAAGCAGCCTGTGGAGCAGCGTACCCTGATGACTTGTCGAAAAAATCCCCAAGTGAAGAGAGTGGCAAGTGCAGTCCGGAAGAACCCCCCGCATCCAAACTCCTGCGTGGATATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013492-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0065126=BTB=WD(100=20.6),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=4.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCGCTGTGCAGAGGAATG
R:
GAGGCTACCACAGTCCTCCAT
Band lengths:
97-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]