DreEX0086663 @ danRer10
Exon Skipping
Gene
ENSDARG00000103253 | zgc:112023
Description
zgc:112023 [Source:ZFIN;Acc:ZDB-GENE-050417-162]
Coordinates
chr6:8927487-8928815:+
Coord C1 exon
chr6:8927487-8927818
Coord A exon
chr6:8927901-8928037
Coord C2 exon
chr6:8928687-8928815
Length
137 bp
Sequences
Splice sites
3' ss Seq
TTTAATTTTTTGTTTTTCAGGAA
3' ss Score
11.54
5' ss Seq
CAGGTTGTT
5' ss Score
1.87
Exon sequences
Seq C1 exon
ATACAAAGTGCCACGAGAGCGACATGAACAAAGAAAATCGATAAGTTTTTGAACATCCTCAACAAAACAAACACAAAATAGACATTCAGCAATGTGTCTGTCAGGGGATGACGTGCAGAAAAACGCGGAAACAGTGCACATTTTTCGGTTTTAGCGTCTGGCGTAGGCAAGGATGGTTAGGCTACTGCGAAGTGTCAATAAGAGCATTCTAGGTTTTTGTTAATAAATCACAAAACGCAATAAAATGGAGGATGAAGATTGTTATGAGGATTGGATGTCCAAGATGCCCTCTCATATGTGGGATATCCCTCTATGGAATCTCGCTATACCGG
Seq A exon
GAAGTCATGACAGCATGACTTACTGTTTAGATAAGCAATCCTCAGTATCGAACTCCACGCCGAGGGTGGTGCAAGTGTTGGACAAGTATTTTCCTTGTATTGTTCGGCCCTGTATAATGAAATGGGCAACAACACAG
Seq C2 exon
GAGGGCGCCATCTCTAACCAACTGGATTTGGGCATTCGGTTCCTGGATCTAAGAATAGCACACAAAATAAAAGACCCTGATGAAGTTTTCTACTTTGCACACGGAGTCTACTCTCTTCTGACCGTTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103253_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0038814=PI-PLC-X=PU(5.8=15.2)
C2:
PF0038814=PI-PLC-X=FE(34.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAACGCGGAAACAGTGCAC
R:
AGGAACCGAATGCCCAAATCC
Band lengths:
258-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]