DreEX0086664 @ danRer10
Exon Skipping
Gene
ENSDARG00000103253 | zgc:112023
Description
zgc:112023 [Source:ZFIN;Acc:ZDB-GENE-050417-162]
Coordinates
chr6:8928905-8937567:+
Coord C1 exon
chr6:8928905-8929060
Coord A exon
chr6:8934270-8934450
Coord C2 exon
chr6:8936440-8937567
Length
181 bp
Sequences
Splice sites
3' ss Seq
CCCTGAAATTGTGATTTCAGGTC
3' ss Score
6.53
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GAAGCACTGACAGAAGTTGCACGTTGGTTAGATCAACACATTAAGGAAGTGGTCATCATTGCACTTTCTAATTTTGAAGGCATGAACCTGGACCAGCACAAAGACCTCATTCAGTTTCTCATTGCCACATTTAACAAAAAAATCTGTCCCAAATCT
Seq A exon
GTCACCCCTTCACTACAGGAGTGCTGGAATCACAGTTATCAGGTTATTCTGTCATATGATGATGAATCTTCAACTGGATATGTAGAACTGTGGCCTCAGTGTCCATACTGGTGGGCGAACAAGTCAGATCCAAACCTAGTTATATCCTACCTGGAGGACCAGAAAAATGAAGGAAGACCAG
Seq C2 exon
GTCAGTTTTTTGCTGCTGGCCTGAACCTAACTGAGGATGCTCGGTATGTACTTTGTCATCCCTGCCAATCATTGCAAAGCATGACCCGACGTTCCTACAGTCTGCTTATGAAGTGGGTGGAACAACAGCGGCCAGGCTCAGGCCAAGCATGCCTTAACATCATCTGTGCAGATTTTGTTGGGATTTTCGGCAGTGAATTCACCCAGCTGGTTATCGGACTCAATCAAATAGAGGCTTGACCCATAAATACACAGCAAATGACGTTGTAGTGTGGTGAAGAGTTGCAAAAAAGCCTATAAATATAAAATGTTCTTCTGAAATAAGCATTTTTTCACCTTGTGTAGGTCCAGTAACTTAAATTTATGACAAAGAACAGCATATTGTCATTACTTTTAAATAAATTATTTAAATAACTGAACATTAACATTGGAGGCTAAGAAACATGCTAATTTTAGAAGAAAATGGCAGATAACATTTAGGTTTTACTCTTCAAATGTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103253_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0038814=PI-PLC-X=FE(42.1=100)
A:
PF0038814=PI-PLC-X=PD(14.0=27.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAGAAGTTGCACGTTGGT
R:
ACTGTAGGAACGTCGGGTCAT
Band lengths:
250-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]