DreEX0086665 @ danRer10
Exon Skipping
Gene
ENSDARG00000046140 | zgc:112038
Description
zgc:112038 [Source:ZFIN;Acc:ZDB-GENE-050522-271]
Coordinates
chr3:21082481-21087585:+
Coord C1 exon
chr3:21082481-21082749
Coord A exon
chr3:21085857-21085996
Coord C2 exon
chr3:21087194-21087585
Length
140 bp
Sequences
Splice sites
3' ss Seq
ATTTTTATTTTTTGTTTTAGATA
3' ss Score
11.2
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
CACCGCTACAGCAAATATAAAAATCTATCTGGGACGTCAGTTCCAAACAGGCTCAAACCCGAATGAGATATCCAGGACATTGACTAAGATCGTCATTCATCCTGACTATAGCACAACTACTCAAAACAATGACATAGCACTGCTCAGACTGAGCTCTTCTGTCACGTTCACGGATTACATTAGGCCAGTGTGTCTGGCCAGTGCTGACAGTGTGTTTGCTGGAGGAACCAAGAGCTGGATTACTGGCTGGGACAAACACAGATCTTCAG
Seq A exon
ATATTCAGGTTACAAACGTGCTGCGGGAGGTGCAGTTACCGGTTGTGAGCAACACAGAATGCAATGCAGACTATAAAGGCATCATTACAGACAACATGATTTGCGCTGGAATAAATGAGGGTGGAAAAGATGCATGTCAG
Seq C2 exon
GGAGACTCTGGAGGACCAATGGTCAGTCAGAATGGCTCTCGATGGATTCAGTCTGGCATTGTGAGTTTCGGTCGAGAGTGTGGACTACCAAGGTACCCTGGAATTTACACCAGAGTCTCTCAATACCAATCTTGGATCACGTCTGAGTTAAGAACCAACCTGCCTGGATTTGTCTCCTTCACCTCCACTGAAACACGCTCCAGCTCACCGAGTCTGCTTTCATTTTACTTTTCTCTCACATCATCTCTCCTTCCTCTAATTTTCTCCTTTTATCTATTTTTTTGAAAAATGTATGGTTTATTAATTAAATTTTTAATTTTTTTTACAAATGTAATTTTTATTTATGCTTTGACGTATTGAGCACTAATAAAACATATTTAGTACTGTATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000046140-'3-6,'3-4,4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.021 C2=0.043
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.3=100)
A:
PF0008921=Trypsin=FE(20.1=100)
C2:
PF0008921=Trypsin=PD(19.7=47.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAGTGTGTTTGCTGGAGG
R:
AGGAGACAAATCCAGGCAGGT
Band lengths:
243-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]