DreEX0086666 @ danRer10
Exon Skipping
Gene
ENSDARG00000046140 | zgc:112038
Description
zgc:112038 [Source:ZFIN;Acc:ZDB-GENE-050522-271]
Coordinates
chr3:21070215-21082392:+
Coord C1 exon
chr3:21070215-21070374
Coord A exon
chr3:21079662-21079682
Coord C2 exon
chr3:21082227-21082392
Length
21 bp
Sequences
Splice sites
3' ss Seq
TATTTTTTGTTTTTCTATAGGAG
3' ss Score
10.49
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
GGCACCGAAACCAATTTGCGGATGCGTCGACTATAAATCAGCCTTCAGAGTGACACTTTCAGTAAAGTAAACAGCAAACAATACTACACAGCAGAGACAGTAAGGATGAAAGTCCGTCAATTTGTATATGTCGGAGAGTTTTTACTTCTCAATATAGCAG
Seq A exon
GAGCACTGTGTCAATTAGACG
Seq C2 exon
TATGTGGCCAGGCGCCTTTAAACAACAATAATGGTGGAGACGATGTCGTTGCAGGCTCTTGGCCCTGGCAGGCGAGCATTCATAGAATTTCCCCTGAAGATCACATCTGTGGCGGGAGTTTAATCAATAAGGACTGGGTTTTATCTGCAGCTCACTGCTTCATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000046140_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0008921=Trypsin=PU(20.1=82.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAGCAGAGACAGTAAGGA
R:
TTGTTGTTTAAAGGCGCCTGG
Band lengths:
103-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]