DreEX0087112 @ danRer10
Exon Skipping
Gene
ENSDARG00000005216 | zgc:158328
Description
zgc:158328 [Source:ZFIN;Acc:ZDB-GENE-070112-1202]
Coordinates
chr15:35443941-35447626:+
Coord C1 exon
chr15:35443941-35444063
Coord A exon
chr15:35446256-35446393
Coord C2 exon
chr15:35447510-35447626
Length
138 bp
Sequences
Splice sites
3' ss Seq
TGAAGTGACGTATCCTGCAGGAA
3' ss Score
6.36
5' ss Seq
TAGGTATGT
5' ss Score
7.76
Exon sequences
Seq C1 exon
ACATTGATGAATGTGTGTCCGGTCAGACTAAGTGCGCTCATGGCTGTGTGAACATACCGGGATCTTTCCGCTGTGTGTGTAACCCGGGATTTGAACTGGGTGCTGATGGAAAACAGTGCTACC
Seq A exon
GAATAGAGATGGAGATTGTGAACGGCTGTGAGAAAAACAACGGTGGCTGCTCTCATCGCTGTGAACACACCACCAGCGGGCCCTTGTGCTCCTGCAACCAAGGCTACCAGCTCGCTGAAGACCTTAAGACATGCATAG
Seq C2 exon
ACATGGATGAGTGTGAAAACGGAGAGGCCTGCTGTAGTCATTTCTGTAAAAACTACCCAGGAGGCTACGAGTGCGGCTGTAGACCAGGATACACGCCCAACGGATGCACATGTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005216-'9-10,'9-9,10-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2)
A:
PF146701=FXa_inhibition=WD(100=76.6),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.0),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGAATGTGTGTCCGGTCA
R:
TCACATGTGCATCCGTTGGG
Band lengths:
234-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]