DreEX0087186 @ danRer10
Exon Skipping
Gene
ENSDARG00000070713 | zgc:162180
Description
zgc:162180 [Source:ZFIN;Acc:ZDB-GENE-070424-25]
Coordinates
chr6:39092449-39093269:+
Coord C1 exon
chr6:39092449-39092594
Coord A exon
chr6:39092676-39093057
Coord C2 exon
chr6:39093159-39093269
Length
382 bp
Sequences
Splice sites
3' ss Seq
AACTCATCCTCTTTCTTTAGGGG
3' ss Score
9.05
5' ss Seq
AGAGTAACT
5' ss Score
1.31
Exon sequences
Seq C1 exon
TGAATCTACCTGCTCCTGGGATTCTGCAGGAGACCATGATTCCAGTAGTGCCTAATGATCAATGTAATGCTCTACTGGGTTCTGGATCTGTCACCAACAACATGATCTGTGCTGGTTTATTACAGGGAGGAAGAGACACCTGCCAG
Seq A exon
GGGGACTCTGGTGGTCCAATGGTGAGCAAGCAGTGTTTAGTGTGGGTTCAGTCTGGTATCACCAGCTGGGGTTATGGCTGTGCTGATCCATATTCACCTGGAGTTTACACCCGCGTATCACAATATCAAAGCTGGATCAACAGCATCATCGTCCAGAACCTTCCAGGATTTGTCCTTTTCAACTCTTCAAGCACATGCTCAAGTGTTTCTATGACTTTACCTAATTCTACTGCATTACCTACTTCTACTATTTCAACTGCATCCCCAACTACTACTACTACCACAAAAATTTCCACGATCTCATCTGCATCTACTAAACCACCTACTACCTCACAAACTTCTACAACAACTACTACGAATTTAAGACCTCCGCCCAATCAGA
Seq C2 exon
CCTCAATCTCTTGTCGCAAGAGATGTGGTGAAAAATACGACATCCGCAACCGCTGCAACTGCAATAATCGCTGCCACAAAAACTGCTGCTGGGATTATGAAAAGAAATGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070713_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.336 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.8=100)
A:
PF0008921=Trypsin=PD(19.5=35.2),PF0103312=Somatomedin_B=PU(0.1=0.0)
C2:
PF0103312=Somatomedin_B=PU(88.1=97.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATCTACCTGCTCCTGGGA
R:
TGCATTTCTTTTCATAATCCCAGCA
Band lengths:
257-639
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]