DreEX0087194 @ danRer10
Exon Skipping
Gene
ENSDARG00000077217 | zgc:162184
Description
zgc:162184 [Source:ZFIN;Acc:ZDB-GENE-070424-83]
Coordinates
chr17:45670975-45671705:+
Coord C1 exon
chr17:45670975-45671188
Coord A exon
chr17:45671262-45671338
Coord C2 exon
chr17:45671456-45671705
Length
77 bp
Sequences
Splice sites
3' ss Seq
GCTGTTATATTATCTTGTAGTGA
3' ss Score
6.34
5' ss Seq
TAGGTCTTT
5' ss Score
-1.12
Exon sequences
Seq C1 exon
GTGGGAGGAATTTGGAAGACACCCCCCAGTTTGAGCAGTGGATACCTGTGCAGTGACGTGTTATGCAAAACAAAAGCATTCAAACATAACACCACACACTTCCTGAAAACCTCATTCAGCCCGAACAGGAATTCCAGAGCCTAGGGCAGAACAAAGAGAAAAGTCAAAGCCAGAAAGACAATCTGTTCATTTAGGCGAGCTGCTCTCCTTGAAG
Seq A exon
TGATAACTGTCAAGATCTGTCCTTCAAGATTACACCCCTGGACAGGTTTACCAAGTTTAGAGTCCCTTATCTTTTAG
Seq C2 exon
TTTTGATGCCAGAAAAATGCCTCCTCCTCAGGTGAACAAACCCATGTCTGAAATGACCATGAAAGAAAAAGCAGGCACTCTTGACGTGCCTCTGAATTTCTTGGGTCAAGACTACCAGGAGTTGCTGAAGAGCTGCATCACCAACAGGATGAGATTTGTCGATGATAGATTTCCTCCAGACAGCAGCTCCATTGACCCAAATAACAAACTCGGACTGGATATGTCCCAAATCCAGTGGCTGAGGCCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077217_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.218
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0064816=Peptidase_C2=PU(10.7=41.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTTAGGCGAGCTGCTCTCC
R:
CATCCTGTTGGTGATGCAGCT
Band lengths:
178-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]