DreEX0087270 @ danRer10
Exon Skipping
Gene
ENSDARG00000055370 | zgc:163121
Description
zgc:163121 [Source:ZFIN;Acc:ZDB-GENE-070424-80]
Coordinates
chr2:28241871-28244899:-
Coord C1 exon
chr2:28244845-28244899
Coord A exon
chr2:28242918-28243069
Coord C2 exon
chr2:28241871-28242113
Length
152 bp
Sequences
Splice sites
3' ss Seq
GCATGTTGATGTGTGTGCAGGTC
3' ss Score
5.72
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
ACAACTCTCAGCCATTTGGCACAGAGTTATTAACAGTGGATACCTCAATGACAAG
Seq A exon
GTCTCCAGAAAGCATTATGGATTTCACACAAGCTGACAGGCGGCATTTAGACAAGAGCAAACAGGACACCAGCTCTTTAGAAAACACAGATGATGGCCTGAAATATGATAGTGGGCGCGTAACTCACGACTTCAGCTGCATCCACAGCAAAG
Seq C2 exon
ATCTGCTCCCTGCTGAAGACGGGGAGGAAGCAACCAAGCACTTCCTGCAGGAGCTTGTAAACATATTGCTGGCCTACATCAGTAAATCCCTGAAACGCAGCACAAAAGTTTTGGATTTCCACTATCCTCACCAGCTCAATGAAGGTCTGGAGGGCTTCAGCCTGGAGCTTCCTGACCAGCCGGATAATCTGGAACAGCTGCTGGTGGACTGCAGGGACACACTGAAATACGGCGTCAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055370_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.654 C2=0.024
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0028214=Pyridoxal_deC=PU(10.4=47.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCACAGAGTTATTAACAGTGGA
R:
CACCAGCAGCTGTTCCAGATT
Band lengths:
245-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]