DreEX0087336 @ danRer10
Exon Skipping
Gene
ENSDARG00000095135 | zgc:171604
Description
zgc:171604 [Source:ZFIN;Acc:ZDB-GENE-080219-37]
Coordinates
chr4:71829275-71856445:-
Coord C1 exon
chr4:71856235-71856445
Coord A exon
chr4:71845962-71846146
Coord C2 exon
chr4:71829275-71829544
Length
185 bp
Sequences
Splice sites
3' ss Seq
TCATCTTAAACGGAGTAAAGTGA
3' ss Score
-8.73
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
CCGCGCTTTCGTGTTTGCTGTTCAACGAAAAGGTTTGTCTTAAACGCTGCAGCCTCGTTTAAACCAAATTATAGTTTATTTTTAACAAGTATTGCCAAACTAATAAATATAACCGTGCGATAGTTAAATTAACTTTTATTTAAAAACTTAATTAGTTTAAAGCGAACGCGAGTAGCAGAAACGGCGCGTCTCATTTCTCCGTCGTGAATCT
Seq A exon
TGACTAAACAAAGAGGAAAACTCCTGGAGAAGCGACTGAGATCTGCTCTTCATTATCATCTACTGTTATAAAGATGGCGTTAATTAAAGAGGAGAATGAAGATGTGAGGATTACAGAAGAGAGTGAAGGTCCGAGGATCACAGAAGTGTTCACACTGAAACATGAAGATCCTGAGGAACAAACAG
Seq C2 exon
AGAAAAGTGTCTAAACGCAGAGGAAAACTCTTGGAGAAGCGACTGAGATCTGCTCTTCATTATCATCTACTGTTATAAAGATGGCGTTAATTAAAGAGGAGAATGAAGATGTGTGGATTAAAGAGGAGAATGAAGAACTGAGGATTAAAGAGGAGAGTGAAGGTCTGAGCATTACAGAAGTGTTCACAGTGAAACATGAAGATCCTGAGGAACAAACAGGTCAGTTTTTATTCCTCAAAGCTGAACTCAGAGTCATTTAATCCTCAATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000095135_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.974 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTTTCGTGTTTGCTGTTCA
R:
TCTCAGTCGCTTCTCCAAGAGT
Band lengths:
256-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]